How to Use Mistral-7B for Lung Cancer Drug Evaluation

Sep 11, 2024 | Educational

In this article, we will guide you through using the Mistral-7B model for evaluating drug responses in lung cancer. This tutorial aims to make the process user-friendly, bridging the gap between complex code and practical implementation.

Step-by-Step Implementation

Let’s break down the process into manageable steps. We’ll cover everything from modeling to evaluation.

1. Import Necessary Libraries

First, you need to import the libraries required for this task. The crucial components include PyTorch and the transformers library to handle the model.

import torch
from transformers import AutoTokenizer, AutoModelForCausalLM, BitsAndBytesConfig

2. Set Up Model Configuration

Now we need to define the model configuration.

base_model_id = "mistralai/Mistral-7B-v0.1"
bnb_config = BitsAndBytesConfig(
    load_in_4bit=True,
    bnb_4bit_use_double_quant=True,
    bnb_4bit_quant_type="nf4",
    bnb_4bit_compute_dtype=torch.bfloat16
)

Think of this step like prepping a special recipe: you’re gathering ingredients to ensure everything is in place before you begin cooking.

3. Load the Pretrained Model

With your configuration in place, it’s time to load the model.

base_model = AutoModelForCausalLM.from_pretrained(
    base_model_id,
    quantization_config=bnb_config,
    device_map="auto",
    trust_remote_code=True
)

This is akin to turning on your oven after preparing the ingredients—you’re ready to start cooking!

4. Load the Evaluator Tokenizer

Next, load the tokenizer to prepare your evaluation input.

eval_tokenizer = AutoTokenizer.from_pretrained(base_model_id, add_bos_token=True, trust_remote_code=True)

5. Prepare the Fine-Tuned Model

Load the fine-tuned version of the Mistral model for your specific needs.

from peft import PeftModel
ft_model = PeftModel.from_pretrained(base_model, "ZEECO1CancerLLM-Mistral7bcheckpoint-500")

6. Evaluation Prompt and Input Preparation

Set up your evaluation prompt and prepare the input for the model.

eval_prompt = "what are the drugs against lung cancer:"
model_input = eval_tokenizer(eval_prompt, return_tensors="pt").to("cuda")

7. Generate and Decode the Output

Finally, generate the response and decode the results.

ft_model.eval()
with torch.no_grad():
    print(eval_tokenizer.decode(
        ft_model.generate(**model_input, max_new_tokens=100, repetition_penalty=1.15)[0],
        skip_special_tokens=True)
)

This step represents the sweet moment when you take your dish out of the oven, eager to taste the results of your efforts.

Troubleshooting Ideas

If you encounter issues during this process, consider the following troubleshooting tips:

  • CUDA Errors: Ensure that CUDA is properly installed and that your GPU meets the requirements for running the model.
  • Package Versions: Check the versions of your installed packages. Compatibility issues can arise with outdated libraries.
  • Model Loading Issues: If the model fails to load, verify that the model ID and the checkpoint paths are correctly specified.
  • Out of Memory Errors: Adjust the batch size or consider running the model on a machine with a higher memory capacity.

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Final Thoughts

At fxis.ai, we believe that such advancements are crucial for the future of AI, as they enable more comprehensive and effective solutions. Our team is continually exploring new methodologies to push the envelope in artificial intelligence, ensuring that our clients benefit from the latest technological innovations.

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