How to Work with PyClustering: A Guide for Data Enthusiasts

Oct 5, 2020 | Data Science

Welcome to the exciting world of data mining! In this article, we’ll explore the PyClustering library, which provides powerful clustering algorithms and methods suitable for both beginners and seasoned developers. However, please be aware that as of 2021, the pyclustering library is no longer supported. The good news is that there are many alternative solutions available!

Understanding PyClustering

PyClustering is a data mining library that includes both Python and C++ implementations for various clustering algorithms, neural networks, and oscillatory networks. Think of it as a gourmet restaurant of algorithms, offering a diverse menu from Agglomerative to DBSCAN. Each algorithm is available in both Python and C++ – similar to having the option to enjoy your meal either in a cozy café (Python) or a fine dining experience (C++) depending on your taste.

Getting Started: Installation

Before diving into the world of clustering, you need to install the library. Here’s how you can do it:

Using Pip

$ pip3 install pyclustering

Manual Installation via Makefile


$ mkdir pyclustering
$ cd pyclustering
$ git clone https://github.com/annovikopyclustering.git .
$ cd ccore
$ make ccore_64bit   # build for 64-bit OS
# $ make ccore_32bit  # build for 32-bit OS
$ cd ..
$ python3 setup.py install
# Optionally - test the library
$ python3 setup.py test

Manual Installation using CMake


$ mkdir pyclustering
$ cd pyclustering
$ git clone https://github.com/annovikopyclustering.git .
$ mkdir build
$ cmake ..
$ make pyclustering-shared
$ cd ..
$ python3 setup.py install
# Optionally - test the library
$ python3 setup.py test

Installation with Microsoft Visual Studio

  1. Clone repository from: https://github.com/annovikopyclustering.git
  2. Open folder pyclustering/ccore
  3. Open Visual Studio project ccore.sln
  4. Select solution platform: x86 or x64
  5. Build pyclustering-shared project.
  6. Add the pyclustering folder to Python path or install it using setup.py:
  7. 
    $ python3 setup.py install
    # Optionally - test the library
    $ python3 setup.py test
    

Exploring Clustering Algorithms

The library offers various clustering algorithms such as:

  • Agglomerative
  • K-Means
  • DBSCAN
  • OPTICS
  • X-Means

For example, let’s say you want to find groups in a dataset using K-Means. This is like choosing the best teams for a game based on the players’ skills. Here’s how to do it:


from pyclustering.cluster.kmeans import kmeans, kmeans_visualizer
from pyclustering.cluster.center_initializer import kmeans_plusplus_initializer
from pyclustering.utils import read_sample

sample = read_sample(FCPS_SAMPLES.SAMPLE_TWO_DIAMONDS)
initial_centers = kmeans_plusplus_initializer(sample, 2).initialize()
kmeans_instance = kmeans(sample, initial_centers)
kmeans_instance.process()
clusters = kmeans_instance.get_clusters()
final_centers = kmeans_instance.get_centers()
kmeans_visualizer.show_clusters(sample, clusters, final_centers)

Troubleshooting

If you encounter issues when working with the PyClustering library, consider the following steps:

  • Ensure you have the required packages installed: scipy, matplotlib, numpy, Pillow.
  • Check your Python version; it should be >= 3.6.
  • Consult the official documentation for detailed guidelines.
  • If the library is behaving unexpectedly, review your installation commands for any typing errors.

For more insights, updates, or to collaborate on AI development projects, stay connected with fxis.ai.

Conclusion

At fxis.ai, we believe that such advancements are crucial for the future of AI, as they enable more comprehensive and effective solutions. Our team is continually exploring new methodologies to push the envelope in artificial intelligence, ensuring that our clients benefit from the latest technological innovations.

Though PyClustering is no longer supported, its robust algorithms are still available to explore. Use this guide to navigate through its functionality and find the best clustering approach for your data mining needs!

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