PANDORA: Your Gateway to Advanced Biomedical Analytics

Sep 17, 2023 | Data Science

Welcome to the world of PANDORA, a comprehensive suite of advanced analytical tools designed to support a wide range of biomedical research applications. If you’re looking to dive deep into the intricate realm of data analysis, PANDORA is here to empower your research journey.

Overview

PANDORA harnesses the power of advanced machine learning techniques, including clustering, t-SNE, PCA, UMAP, and interpretable machine learning models. This sophisticated tool enhances biomedical discovery, supports multiclass outcomes, facilitates predictive modeling, biomarker discovery, and delivers promising results for omics data analysis within systems biology.

How to Install PANDORA

Getting started with PANDORA is a breeze with Docker! Here’s a quick-start guide:

Requirements

  • Software:
    • Windows, Linux, or MacOS
    • Docker (version 17.05 or later is required)
  • Minimum Suggested Hardware:
    • 64GB RAM
    • 8 CPU Cores (16 threads) with 3 GHz base frequency

Installing PANDORA

To install PANDORA, follow these steps:

  • Open your favorite Terminal (Windows Power Shell for Windows users).
  • Run the following command:
  • docker run --rm --detach --name genular --tty --interactive --env IS_DOCKER=true --env TZ=EuropeLondon --oom-kill-disable --volume genular_frontend_latest:/var/www/genular/pandora --volume genular_backend_latest:/var/www/genular/pandora-backend --volume genular_data_latest:/mnt/usr/data --publish 3010:3010 --publish 3011:3011 --publish 3012:3012 --publish 3013:3013 genular/pandora:latest
  • PANDORA will be downloaded and started, accessible via a web browser at http://localhost:3010.
  • If prompted, please allow connections through your Windows Firewall.

Troubleshooting

If you run into issues while using PANDORA, here are a few troubleshooting tips:

  • Ensure Docker is installed correctly and running.
  • If Docker fails to pull the image, verify your internet connection.
  • For firewall-related issues, ensure the necessary permissions are set for Docker.
  • If PANDORA does not start, check command syntax or installed Docker version.

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Reinstalling PANDORA

To ensure a clean reinstallation of PANDORA, follow these steps:

  • List your containers, images, and volumes using:
  • docker ps -a
  • Stop and delete old containers:
  • docker stop ContainerName
    docker rm ContainerName
  • Remove unnecessary images and volumes:
  • docker volume rm genular_frontend_latest genular_backend_latest genular_data_latest
  • Now, you’re ready for a fresh installation of PANDORA!

Contributing

Contributions to PANDORA are highly encouraged! Here’s how you can participate:

  • Check out our public issues board.
  • Claim an unassigned issue and start working on it.
  • Fork the project and create a new branch for your changes.
  • Submit a pull request once your code is ready for review.

Final Thoughts

At fxis.ai, we believe that such advancements are crucial for the future of AI, as they enable more comprehensive and effective solutions. Our team is continually exploring new methodologies to push the envelope in artificial intelligence, ensuring that our clients benefit from the latest technological innovations.

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