Understanding the Statistical Significance of Comparing Predictions: A Python Implementation

Oct 31, 2020 | Data Science

Welcome to our guide on how to compute the statistical significance of comparing two sets of predictions using the ROC AUC (Receiver Operating Characteristic Area Under the Curve). This guide aims to walk you through a Python implementation that leverages the techniques discussed in the research by X. Sun and W. Xu. Buckle up as we dive into the world of statistical analysis with a creative analogy to enhance your understanding!

What is ROC AUC?

The ROC AUC is a metric used to evaluate the performance of classification models. It ranges from 0 to 1, where 1 indicates a perfect model and 0.5 signifies a model with no discrimination ability. Think of it as a scorecard for a basketball player, with points earned for each successful shot taken (true positive rate) while penalizing unsuccessful shots (false positive rate).

Why Compare Two Sets of Predictions?

In an era where multiple models are generated, comparing the performance of two predictive models becomes essential to determine which one performs better statistically. Just like a mini-tournament between two basketball players, we want to find out who scores better under comparable conditions.

Setting Up the Python Environment

Before diving into the implementation, make sure you have Python installed along with the following libraries:

  • numpy
  • scikit-learn
  • scipy

You can install these libraries via pip:

pip install numpy scikit-learn scipy

Implementation Steps

The following steps outline the Python implementation for computing the statistical significance and the variance of a single ROC AUC estimate:


import numpy as np
from sklearn.metrics import roc_auc_score
from scipy import stats

def compute_auc(y_true, y_scores):
    return roc_auc_score(y_true, y_scores)

def delong_roc_variance(aucs):
    n = len(aucs)
    return np.var(aucs) / n

def compare_models(y_true, scores1, scores2):
    auc1 = compute_auc(y_true, scores1)
    auc2 = compute_auc(y_true, scores2)
    var1 = delong_roc_variance(scores1)
    var2 = delong_roc_variance(scores2)

    z = (auc1 - auc2) / np.sqrt(var1 + var2)
    p_value = stats.norm.sf(abs(z)) * 2  # two-tailed test
    return auc1, auc2, z, p_value

Code Explanation through Analogy

Imagine you’re a basketball coach comparing two players. Each player takes several shots (predictions) in different games (instances). The compute_auc function helps you calculate how accurately each player scores compared to the total shots taken, providing their individual AUC scores like a scoreboard. The delong_roc_variance function acts as your assistant, evaluating the players’ shooting consistency across games, while the compare_models function combines all this information to calculate the difference in performance, just as you would compare scores from different matches.

Troubleshooting

While implementing this code, you might encounter some issues. Here are a few troubleshooting tips:

  • Import Errors: Ensure all required libraries are installed correctly. Use pip to install them as shown earlier.
  • Data Issues: Make sure your ‘y_true’ and ‘y_scores’ lists/arrays are of equal length and properly formatted.
  • NaN or Infinity Errors: Check your data for invalid numbers; clean any missing values before computation.

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Conclusion

With this methodology, you can effectively assess the statistical significance of your model predictions using ROC AUC in Python. This helps you make informed decisions based on solid statistical foundations.

At fxis.ai, we believe that such advancements are crucial for the future of AI, as they enable more comprehensive and effective solutions. Our team is continually exploring new methodologies to push the envelope in artificial intelligence, ensuring that our clients benefit from the latest technological innovations.

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